PyGT
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PyGT.io
PyGT.GT
PyGT.stats
PyGT.mfpt
PyGT.spectral
PyGT.tools
Basic Tutorial
Coarse-graining Tutorial
PyGT
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Index
A
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B
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C
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E
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F
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G
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K
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L
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M
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P
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R
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S
A
Analyze_KTN (class in PyGT.tools)
B
blockGT() (in module PyGT.GT)
C
check_detailed_balance() (in module PyGT.tools)
check_kemeny() (in module PyGT.tools)
choose_nodes_to_remove() (in module PyGT.tools)
commdata (PyGT.tools.Analyze_KTN attribute)
commpi (PyGT.tools.Analyze_KTN attribute)
communities (PyGT.tools.Analyze_KTN attribute)
community_MFPT_matrix() (in module PyGT.mfpt)
compute_escape_stats() (in module PyGT.stats)
compute_MFPT() (in module PyGT.mfpt)
compute_passage_stats() (in module PyGT.stats)
compute_rates() (in module PyGT.stats)
construct_coarse_rate_matrix_Hummer_Szabo() (PyGT.tools.Analyze_KTN method)
construct_coarse_rate_matrix_KKRA() (PyGT.tools.Analyze_KTN method)
construct_coarse_rate_matrix_LEA() (PyGT.tools.Analyze_KTN method)
E
eig_wrapper() (in module PyGT.tools)
F
full_MFPT_matrix() (in module PyGT.mfpt)
G
get_comm_stat_probs() (PyGT.tools.Analyze_KTN method)
get_eigenfunction_error() (PyGT.tools.Analyze_KTN method)
get_intercommunity_MFPTs_linear_solve() (PyGT.tools.Analyze_KTN method)
get_intercommunity_weighted_MFPTs() (PyGT.tools.Analyze_KTN method)
get_intermicrostate_mfpts_fundamental_matrix() (PyGT.tools.Analyze_KTN method)
get_intermicrostate_mfpts_linear_solve() (PyGT.tools.Analyze_KTN method)
get_timescale_error() (PyGT.tools.Analyze_KTN method)
K
K (PyGT.tools.Analyze_KTN attribute)
L
load_CTMC() (in module PyGT.tools)
load_DTMC() (in module PyGT.tools)
load_ktn() (in module PyGT.io)
load_ktn_AB() (in module PyGT.io)
M
make_fastest_path() (in module PyGT.tools)
P
path (PyGT.tools.Analyze_KTN attribute)
pi (PyGT.tools.Analyze_KTN attribute)
project() (in module PyGT.spectral)
PyGT (module)
PyGT.GT (module)
PyGT.io (module)
PyGT.mfpt (module)
PyGT.spectral (module)
PyGT.stats (module)
PyGT.tools (module)
R
read_communities() (in module PyGT.io)
(PyGT.tools.Analyze_KTN method)
read_ktn_info() (in module PyGT.io)
reduce() (in module PyGT.spectral)
S
singleGT() (in module PyGT.GT)
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